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609.1

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mathieuboudreau 
Remove Pyplot and refactor plotting to object-oriented plotting  (#187)

* Remove unused Matplotlib importation

* Remove unused Matplotlib importation

* Change pyplot mode to OO mode

* Format code to improve clarity

* Change pyplot mode to OO mode for compute_morphmetrics.py

* Format code to improve clarity

* Replace old plot module and Clean module import section

* Change image plotting to full OO

* Automatically reformat

* Update and clean import section

* Replace old plot module and clean module import section

* Update plotting to full OO and Refactor plotting functions for simplified usage

* visualize.py: Update the import section

* FIX missing library

* FIX missing library

* visualize.py: Update the import section

* visualize.py: changed plotting style to OO for visualize_training()

* HOTFIX: import imread from scipy

* visualize.py: Change plotting styte to full OO for visualize_segmentation()

* visualize.py: Reformat automatically

* HOTFIX: fix bad module name for import

* visualize.py: Update return type for figure

* compute_morphometrics.py: Update return type to  for display func

* Rename to draw_axon_diameter and update saving the  map of diameter
====================================================================

In `compute_morphometrics.py`:
The `display_axon_diameter` function is now renamed to
`draw_axon_diameter` to improve meaning.

Add function `save_map_of_axon_diameters` to save the map to
a certain folder.
Then modified all necessary files to be compatible with the
updates.

* visualize.py: Fix documentation for

* training_guideline.ipynb: Update plotting func to OO

* Remove unused Matplotlib importation

* Remove unused Matplotlib importation

* Change pyplot mode to OO mode

* Format code to improve clarity

* Change pyplot mode to OO mode for compute_morphmetrics.py

* Format code to improve clarity

* Replace old plot module an... (continued)

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Source Files on job 609.1