5
23%
master: 23%

Ran 30 Mar 2018 06:10PM UTC

Files 45

Run time 2s

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Committed 30 Mar 2018 05:52PM UTC coverage: 69.729% (-0.1%) from 69.838%

Job # TRAVIS_JOB=test_py36 PYTEST_ADDOPTS="-rsxX -n 2 --durations=25 --fixture-durations=10 --junit-xml=pytest.xml --cov-report= --cov broad_utils --cov illumina --cov assembly --cov interhost --cov intrahost --cov metagenomics --cov ncbi --cov read_utils --cov reports --cov taxon_filter --cov tools --cov util" BUNDLE_SECRET=[secure]

Build Type

push

travis-ci

Committed by

tomkinsc

Commit Message

fixes to tbl_transfer_prealigned oob_clip (#807)

* update tbl2asn

* keep left-trimmed CDS features in frame

* significant bugfixes to oob_clip treatment in tbl_transfer_prealigned when clipping features on the negative strand. also incorporate CDS rounding by 3 during clipping for these cases too.

Run Details

6125 of 8784 relevant lines covered (69.73%)

0.7 hits per line

Source Files on job 5833.5 (TRAVIS_JOB=test_py36 PYTEST_ADDOPTS="-rsxX -n 2 --durations=25 --fixture-durations=10 --junit-xml=pytest.xml --cov-report= --cov broad_utils --cov illumina --cov assembly --cov interhost --cov intrahost --cov metagenomics --cov ncbi --cov read_utils --cov reports --cov taxon_filter --cov tools --cov util" BUNDLE_SECRET=[secure])

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