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broadinstitute / viral-ngs / 5833
23%

Build:
DEFAULT BRANCH: master
Ran 30 Mar 2018 06:10PM UTC
Jobs 1
Files 45
Run time 2s
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tomkinsc
fixes to tbl_transfer_prealigned oob_clip (#807)

* update tbl2asn

* keep left-trimmed CDS features in frame

* significant bugfixes to oob_clip treatment in tbl_transfer_prealigned when clipping features on the negative strand. also incorporate CDS rounding by 3 during clipping for these cases too.

22 of 22 new or added lines in 1 file covered. (100.0%)

6125 of 8784 relevant lines covered (69.73%)

0.7 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
22
100.0
ncbi.py

Uncovered Existing Lines

Lines Coverage ∆ File
1
100.0
metagenomics.py
1
100.0
util/cmd.py
1
100.0
ncbi.py
3
100.0
util/version.py
Jobs
ID Job ID Ran Files Coverage
5 5833.5 (TRAVIS_JOB=test_py36 PYTEST_ADDOPTS="-rsxX -n 2 --durations=25 --fixture-durations=10 --junit-xml=pytest.xml --cov-report= --cov broad_utils --cov illumina --cov assembly --cov interhost --cov intrahost --cov metagenomics --cov ncbi --cov read_utils --cov reports --cov taxon_filter --cov tools --cov util" BUNDLE_SECRET=[secure]) 30 Mar 2018 06:10PM UTC 0
69.73
Travis Job 5833.5
Source Files on build 5833
Detailed source file information is not available for this build.
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