6
23%
master: 23%

Ran 31 Jan 2018 04:06PM UTC

Files 39

Run time 3s

Badge

Committed 31 Jan 2018 03:54PM UTC coverage: 33.817% (-0.07%) from 33.888%

Job # TRAVIS_JOB=test_snakemake PYTEST_ADDOPTS="-rsxX -n 2 --durations=25 --fixture-durations=10 --junit-xml=pytest.xml --cov-report= --cov broad_utils --cov illumina --cov assembly --cov interhost --cov intrahost --cov metagenomics --cov ncbi --cov read_utils --cov reports --cov taxon_filter --cov tools --cov util" BUNDLE_SECRET=[secure]

Build Type

push

travis-ci

Committed by

web-flow

Commit Message

modify illumina_demux to support simplex sequencing runs (#776)

* modify illumina_demux to support non-barcoded simplex runs

* update docstring

* add assertions to illumina_demux in order to check command line args a bit

this validation should probably be done upstream if we break out the
parser into simplex and multiplex variants

* in response to code review by @dpark01

* in response to review by @dpark01

Run Details

1956 of 5784 relevant lines covered (33.82%)

0.34 hits per line

Source Files on job 5499.6 (TRAVIS_JOB=test_snakemake PYTEST_ADDOPTS="-rsxX -n 2 --durations=25 --fixture-durations=10 --junit-xml=pytest.xml --cov-report= --cov broad_utils --cov illumina --cov assembly --cov interhost --cov intrahost --cov metagenomics --cov ncbi --cov read_utils --cov reports --cov taxon_filter --cov tools --cov util" BUNDLE_SECRET=[secure])

broadinstitute / viral-ngs / 5499 / 6
23%
master: 23%

README BADGES
x

Markdown

Textile

RDoc

HTML

Rst

broadinstitute / viral-ngs / 5499 / 6 23% master: 23%

README BADGES x

Markdown

Textile

RDoc

HTML

Rst

broadinstitute / viral-ngs / 5499 / 6
23%
master: 23%

README BADGES
x