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broadinstitute / viral-ngs / 5499
23%

Build:
DEFAULT BRANCH: master
Ran 31 Jan 2018 04:06PM UTC
Jobs 2
Files 45
Run time 9min
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modify illumina_demux to support simplex sequencing runs (#776)

* modify illumina_demux to support non-barcoded simplex runs

* update docstring

* add assertions to illumina_demux in order to check command line args a bit

this validation should probably be done upstream if we break out the
parser into simplex and multiplex variants

* in response to code review by @dpark01

* in response to review by @dpark01

52 of 52 new or added lines in 2 files covered. (100.0%)

6104 of 8633 relevant lines covered (70.71%)

0.93 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
14
100.0
tools/picard.py
31
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illumina.py

Uncovered Existing Lines

Lines Coverage ∆ File
1
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illumina.py
Jobs
ID Job ID Ran Files Coverage
5 5499.5 (TRAVIS_JOB=test_py36 PYTEST_ADDOPTS="-rsxX -n 2 --durations=25 --fixture-durations=10 --junit-xml=pytest.xml --cov-report= --cov broad_utils --cov illumina --cov assembly --cov interhost --cov intrahost --cov metagenomics --cov ncbi --cov read_utils --cov reports --cov taxon_filter --cov tools --cov util" BUNDLE_SECRET=[secure]) 31 Jan 2018 04:12PM UTC 0
70.65
Travis Job 5499.5
6 5499.6 (TRAVIS_JOB=test_snakemake PYTEST_ADDOPTS="-rsxX -n 2 --durations=25 --fixture-durations=10 --junit-xml=pytest.xml --cov-report= --cov broad_utils --cov illumina --cov assembly --cov interhost --cov intrahost --cov metagenomics --cov ncbi --cov read_utils --cov reports --cov taxon_filter --cov tools --cov util" BUNDLE_SECRET=[secure]) 31 Jan 2018 04:06PM UTC 0
33.82
Travis Job 5499.6
Source Files on build 5499
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