Ensembl / ensembl-hive / 1209 / 1
89%
main: 87%

LAST BUILD BRANCH: bau/copyright-2026
DEFAULT BRANCH: main
Ran
Files 163
Run time 6s
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Rst
coverage: 86.614% (+0.008%) from 86.606%
EHIVE_TEST_PIPELINE_URLS='mysql://travis@127.0.0.1/'

push

travis-ci

muffato 
Protect the UPDATE (similar to other UPDATEs of the worker table in Queen too)

When the worker table gets busy, the UPDATEs can fail because of timeout (see
below), so we "protect" them with our beloved protected_prepare_execute.

Beekeeper : loop #20 ======================================================
GarbageCollector:       Checking for lost Workers...
GarbageCollector:       [Queen:] out of 2 Workers that haven't checked in during the last 5 seconds...
DBD::mysql::st execute failed: Lock wait timeout exceeded; try restarting transaction at /homes/muffato/workspace/src/hive/master/modules/Bio/EnsEMBL/Hive/DBSQL/StatementHandle.pm line 119.
DBD::mysql::st execute failed: Lock wait timeout exceeded; try restarting transaction at /homes/muffato/workspace/src/hive/master/modules/Bio/EnsEMBL/Hive/DBSQL/StatementHandle.pm line 119.
 at /homes/muffato/workspace/src/hive/master/modules/Bio/EnsEMBL/Hive/DBSQL/StatementHandle.pm line 145.
        Bio::EnsEMBL::Hive::DBSQL::StatementHandle::__ANON__(Bio::EnsEMBL::Hive::DBSQL::StatementHandle=HASH(0x3c294f0), 14) called at /homes/muffato/workspace/src/hive/master/modules/Bio/EnsEMBL/Hive/Queen.pm line 485
        Bio::EnsEMBL::Hive::Queen::check_for_dead_workers(Bio::EnsEMBL::Hive::Queen=HASH(0x3916fc0), Bio::EnsEMBL::Hive::Valley=HASH(0x35e7c08), 0) called at /homes/muffato/workspace/src/hive/master/scripts/beekeeper.pl line 501
        main::run_autonomously(HASH(0x222ce18), Bio::EnsEMBL::Hive::HivePipeline=HASH(0x34e1aa0), -1, "FOREVER", Bio::EnsEMBL::Hive::Valley=HASH(0x35e7c08), ARRAY(0x3a6c0c8), undef, undef, ...) called at /homes/muffato/workspace/src/hive/master/scripts/beekeeper.pl line 378
        main::main() called at /homes/muffato/workspace/src/hive/master/scripts/beekeeper.pl line 30

8088 of 9338 relevant lines covered (86.61%)

2001.33 hits per line

Source Files on job 1209.1 (EHIVE_TEST_PIPELINE_URLS='mysql://travis@127.0.0.1/')