Ensembl / ensembl-hive / 1209
89%
main: 87%

LAST BUILD BRANCH: bau/copyright-2026
DEFAULT BRANCH: main
Ran
Jobs 1
Files 163
Run time 7s
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travis-ci

muffato 
Protect the UPDATE (similar to other UPDATEs of the worker table in Queen too)

When the worker table gets busy, the UPDATEs can fail because of timeout (see
below), so we "protect" them with our beloved protected_prepare_execute.

Beekeeper : loop #20 ======================================================
GarbageCollector:       Checking for lost Workers...
GarbageCollector:       [Queen:] out of 2 Workers that haven't checked in during the last 5 seconds...
DBD::mysql::st execute failed: Lock wait timeout exceeded; try restarting transaction at /homes/muffato/workspace/src/hive/master/modules/Bio/EnsEMBL/Hive/DBSQL/StatementHandle.pm line 119.
DBD::mysql::st execute failed: Lock wait timeout exceeded; try restarting transaction at /homes/muffato/workspace/src/hive/master/modules/Bio/EnsEMBL/Hive/DBSQL/StatementHandle.pm line 119.
 at /homes/muffato/workspace/src/hive/master/modules/Bio/EnsEMBL/Hive/DBSQL/StatementHandle.pm line 145.
        Bio::EnsEMBL::Hive::DBSQL::StatementHandle::__ANON__(Bio::EnsEMBL::Hive::DBSQL::StatementHandle=HASH(0x3c294f0), 14) called at /homes/muffato/workspace/src/hive/master/modules/Bio/EnsEMBL/Hive/Queen.pm line 485
        Bio::EnsEMBL::Hive::Queen::check_for_dead_workers(Bio::EnsEMBL::Hive::Queen=HASH(0x3916fc0), Bio::EnsEMBL::Hive::Valley=HASH(0x35e7c08), 0) called at /homes/muffato/workspace/src/hive/master/scripts/beekeeper.pl line 501
        main::run_autonomously(HASH(0x222ce18), Bio::EnsEMBL::Hive::HivePipeline=HASH(0x34e1aa0), -1, "FOREVER", Bio::EnsEMBL::Hive::Valley=HASH(0x35e7c08), ARRAY(0x3a6c0c8), undef, undef, ...) called at /homes/muffato/workspace/src/hive/master/scripts/beekeeper.pl line 378
        main::main() called at /homes/muffato/workspace/src/hive/master/scripts/beekeeper.pl line 30

8088 of 9338 relevant lines covered (86.61%)

2001.33 hits per line

Jobs
ID Job ID Ran Files Coverage
1 1209.1 (EHIVE_TEST_PIPELINE_URLS='mysql://travis@127.0.0.1/') 0
86.61
 Travis Job 1209.1
Source Files on build 1209
Detailed source file information is not available for this build.