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Ran 08 Oct 2017 08:04AM UTC

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Committed 08 Oct 2017 07:53AM UTC coverage: 100.0%. Remained the same

Job # PYVER="3.5"

Build Type

push

travis-ci

Committed by

jakirkham

Commit Message

Vectorize away for-loop in pdist internal

Eliminate the `for`-loop and condition checking with `pdist`'s wrapper
function. Instead make use of boolean arrays and `nonzero` to extract
the relevant indices to compute over. Also make use of NumPy's
`apply_along_axis` to replace the `for`-loop with a vectorized NumPy
operation. Speeds up computation a bit for the diagonal blocks where
many of pairs of coordinates do not need the metric computed.

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