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MAINT: compat with new pandas and numpydoc; fix deprecation warnings (#1535)

Made the following compatibility updates to fix the longstanding Travis-CI failures and make the codebase a little more futureproof:

- The codebase is now compatible with pandas >=0.19.2, including the latest pandas release (0.20.3), which introduced a number of backwards-incompatible changes.

- Fixed doc build failures by unpinning numpydoc version (latest PyPI numpydoc release is now compatible with latest Sphinx release).

- Fixed all deprecation warnings coming from third-party packages -- most were pandas deprecations, and one was from `scipy.stats`.

- Fixed docs in a couple of places that weren't compatible with numpydoc.

Fixes #1497
Fixes #1511
Fixes #1531

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