biocore / scikit-bio / 3601

0%

push

travis-ci

MAINT: compat with new pandas and numpydoc; fix deprecation warnings (#1535)

Made the following compatibility updates to fix the longstanding Travis-CI failures and make the codebase a little more futureproof:

- The codebase is now compatible with pandas >=0.19.2, including the latest pandas release (0.20.3), which introduced a number of backwards-incompatible changes.

- Fixed doc build failures by unpinning numpydoc version (latest PyPI numpydoc release is now compatible with latest Sphinx release).

- Fixed all deprecation warnings coming from third-party packages -- most were pandas deprecations, and one was from `scipy.stats`.

- Fixed docs in a couple of places that weren't compatible with numpydoc.

Fixes #1497
Fixes #1511
Fixes #1531

11278 of 11551 branches covered (97.64%)

27033 of 27224 relevant lines covered (99.3%)

0.99 hits per line