2
23%
master: 23%

Ran 31 Aug 2017 10:35PM UTC

Files 44

Run time 1min

Badge

Embed ▾

Committed 31 Aug 2017 10:22PM UTC coverage: 67.56% (+0.8%) from 66.741%

Job # 4314.2

Build Type

push

travis-ci

Committed by

web-flow

Commit Message

added spades assembler (#656)

Adding spades assembler.

* fixed small bugs, changed tests from trinity to spades

* keep spades temp dir if needed for debugging

* added comments, passed more options to spades, misc fixes as suggested by yesimon

* changed handling of empty inputs

* renamed temp_dir to tmp_dir for consistenncy

* fixed bug related to untrusted contigs; added test of assembly with previously assembled contigs

* added early checks that files specified in the command are readable/writable

* small fixes to test_check_paths

* fixed missing paren

* removed extraneous test line; cleaned up comments; added spades_opts as command-line param

* skip the previously-assembled test for now

* check_paths - handle case of a file that is both read and written

* removed test_check_paths() for now

* removed extra assertion

* removed whitespace

* tweaked arg comments and defaults

Run Details

5473 of 8101 relevant lines covered (67.56%)

0.68 hits per line

broadinstitute / viral-ngs / 4314 / 2
23%
master: 23%

README BADGES
x

Markdown

Textile

RDoc

HTML

Rst

Source Files on job 4314.2

broadinstitute / viral-ngs / 4314 / 2 23% master: 23%

README BADGES x

Markdown

Textile

RDoc

HTML

Rst

Source Files on job 4314.2

broadinstitute / viral-ngs / 4314 / 2
23%
master: 23%

README BADGES
x