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Ran 25 Aug 2017 11:25PM UTC

Files 42

Run time 3s

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Committed 25 Aug 2017 11:13PM UTC coverage: 66.533% (+0.2%) from 66.289%

Job # 4264.1

Build Type

push

travis-ci

Committed by

tomkinsc

Commit Message

Set a threshold on alignment score when generating spike-in reports (#666)

The spike-in reports uses bwa to align reads to spike-in sequences,
but bwa does not set a threshold on alignment score when reporting
alignments given paired-end data. As a result, many spike-ins can
be reported as hits but are false positives (for example, some
spike-in sequences have a polyA tail and reads with a polyA stretch
can map to these spike-in sequences). Setting a threshold on which
alignments are reported alleviates this problem.

Run Details

5290 of 7951 relevant lines covered (66.53%)

0.67 hits per line

broadinstitute / viral-ngs / 4264 / 1
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master: 23%

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broadinstitute / viral-ngs / 4264 / 1
23%
master: 23%

README BADGES
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