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broadinstitute / viral-ngs / 4264
23%

Build:
DEFAULT BRANCH: master
Ran 25 Aug 2017 11:20PM UTC
Jobs 3
Files 42
Run time 8min
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Set a threshold on alignment score when generating spike-in reports (#666)

The spike-in reports uses bwa to align reads to spike-in sequences,
but bwa does not set a threshold on alignment score when reporting
alignments given paired-end data. As a result, many spike-ins can
be reported as hits but are false positives (for example, some
spike-in sequences have a polyA tail and reads with a polyA stretch
can map to these spike-in sequences). Setting a threshold on which
alignments are reported alleviates this problem.

5 of 5 new or added lines in 1 file covered. (100.0%)

5300 of 7951 relevant lines covered (66.66%)

1.99 hits per line

Jobs
ID Job ID Ran Files Coverage
1 4264.1 25 Aug 2017 11:25PM UTC 0
66.53
Travis Job 4264.1
2 4264.2 25 Aug 2017 11:20PM UTC 0
66.43
Travis Job 4264.2
3 4264.3 25 Aug 2017 11:28PM UTC 0
66.3
Travis Job 4264.3
Source Files on build 4264
Detailed source file information is not available for this build.
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