bigdatagenomics / adam / 2866 / 7

Ran 25 Jul 2017 05:00PM UTC

Files 138

Run time 5s

Badge

Embed ▾

Committed 25 Jul 2017 04:47PM UTC coverage: 83.526% (-0.01%) from 83.539%

Job # 2866.7

Build Type

push

jenkins

Committed by

heuermh

Commit Message

[ADAM-1614] Add VariantContextRDD to R and Python APIs.

Resolves #1614. Restructures both R and Python APIs to add `GenomicDataset`
class, which inherits from `GenomicRDD`, as in adam-core. Moves all implementing
classes onto `GenomicDataset`, and adds `VariantContextRDD` which is the lone
class that extends `GenomicRDD`. Deletes `saveAsVcf` from `GenotypeRDD` and
`VariantRDD`, and moves this functionality into `toVariantContextRDD` functions
and `VariantContextRDD.saveAsVcf`. Additionally, adds `sort` and
`sortLexicographically` to the R API, and fixes `sortLexicographically` in
the Python API (it was calling `sort` previously).

Coverage Stats

6145 of 7357 relevant lines covered (83.53%)

0.84 hits per line

bigdatagenomics / adam / 2866 / 7

README BADGES
x

Markdown

Textile

RDoc

HTML

Rst

Source Files on job 2866.7

bigdatagenomics / adam / 2866 / 7

README BADGES x

Markdown

Textile

RDoc

HTML

Rst

Source Files on job 2866.7

README BADGES
x