2866

Ran 25 Jul 2017 04:58PM UTC

Jobs 8

Files 138

Run time 1min

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Build # 2866

Build Type

push

jenkins

Committed by

heuermh

Commit Message

[ADAM-1614] Add VariantContextRDD to R and Python APIs.

Resolves #1614. Restructures both R and Python APIs to add `GenomicDataset`
class, which inherits from `GenomicRDD`, as in adam-core. Moves all implementing
classes onto `GenomicDataset`, and adds `VariantContextRDD` which is the lone
class that extends `GenomicRDD`. Deletes `saveAsVcf` from `GenotypeRDD` and
`VariantRDD`, and moves this functionality into `toVariantContextRDD` functions
and `VariantContextRDD.saveAsVcf`. Additionally, adds `sort` and
`sortLexicographically` to the R API, and fixes `sortLexicographically` in
the Python API (it was calling `sort` previously).

Coverage Stats

6177 of 7357 relevant lines covered (83.96%)

6.68 hits per line

Jobs

ID	Job ID	Ran	Coverage
1	2866.1	25 Jul 2017 04:58PM UTC	83.52
2	2866.2	25 Jul 2017 04:58PM UTC	83.54
3	2866.3	25 Jul 2017 04:59PM UTC	83.52
4	2866.4	25 Jul 2017 04:59PM UTC	83.54
5	2866.5	25 Jul 2017 05:00PM UTC	83.54
6	2866.6	25 Jul 2017 05:00PM UTC	83.54
7	2866.7	25 Jul 2017 05:00PM UTC	83.53
8	2866.8	25 Jul 2017 05:00PM UTC	83.53

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