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amnona / calour / 569 / 4
83%
master: 83%

Build:
DEFAULT BRANCH: master
Ran 04 May 2017 05:00AM UTC
Files 41
Run time 1s
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04 May 2017 04:51AM UTC coverage: 78.321% (-0.2%) from 78.562%
CONDA_PY=36

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Develop (#58)

* update timeseries.ipynb

* add test for dendrogram

* add a drop parameter to drop samples with no metadata

* add test for plotting module

* require higher scikit-bio version

* add __getitem__ so can use exp[sampleid,featureid]

* add __getitem__ so can use exp[sampleid,featureid]

* add CALOUR_CONFIG_FILE env. var for config file location

* show warning message if database module not installed

* fix hdf5 biom save to include taxonomy

* fix the json/hdf5 taxonomy incosistancy

* fix the json/hdf5 taxonomy incosistancy

* fix the json/hdf5 taxonomy incosistancy

* add new functions to doc

* fix testing for the new hdf taxonomy save and default to no removing k__

* add moving pic for the manuscript

* minor change on Experiment.__getitem__

2948 of 3764 relevant lines covered (78.32%)

0.78 hits per line

Source Files on job 569.4 (CONDA_PY=36)
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