bigdatagenomics / adam / 2545 / 4

Ran 27 Mar 2017 11:12PM UTC

Files 244

Run time 12s

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Committed 27 Mar 2017 11:04PM UTC coverage: 80.569% (+0.2%) from 80.349%

Job # 2545.4

Build Type

push

jenkins

Committed by

heuermh

Commit Message

[ADAM-1455] Upgrade to Hadoop-BAM 7.8.0 and htsjdk 2.9.1

Resolves #1455. Adds `org.bdgenomics.adam.rdd.read.RepairPartitions`, which
works around removed functionality from Hadoop-BAM for keeping read pairs from
a queryname sorted BAM file in a single partition.

Coverage Stats

4731 of 5872 relevant lines covered (80.57%)

0.81 hits per line

bigdatagenomics / adam / 2545 / 4

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