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Ran 15 Nov 2016 04:36PM UTC

Files 119

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Committed 15 Nov 2016 04:11PM UTC coverage: 83.791% (-0.02%) from 83.81%

Job # 2904.1

Build Type

push

travis-ci

Committed by

web-flow

Commit Message

Refactored the branchlength setting and getting API. (#219)

* Refactored the branchlength setting and getting API.

* Created system for getting and setting branchlengths from any kind of metadata, providing three methods are defined for the piece of metadata.

* First draft of branchlength and branchlength! that is extensible to any metadata type.

* Added docstrings

* Added comment lines

* Resolved a phylo testing error

* Corrected add_branch! create_branch! test errors

* Changed some rem_branch! calls to destroy_branch

* Introduces the BranchLength wrapper type and BasicBranch BranchMetaData type

* Moved BranchMetadata to it's own file

* Added convert method for BranchLength wrapper type

* Fixed error in convert method

* Fixed test

* Edited metadata

* BLWrapper

* Removed constructor and wrapper

* Removed parartric nature of basic branch

* Added branchlength method for Float64

* Corrected fault in generated function

* Edited test of branchlength setting

* Corrected error in branchlength setting

* Corrected test

Coverage Stats

6167 of 7360 relevant lines covered (83.79%)

1092493.65 hits per line

BioJulia / Bio.jl / 2904 / 1
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master: 64%

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BioJulia / Bio.jl / 2904 / 1 64% master: 64%

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Source Files on job 2904.1

BioJulia / Bio.jl / 2904 / 1
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master: 64%

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