PrincetonUniversity / slurmise / 25214554667 / 1

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Patch snakefile function (#46)

* wip: patch snakefile function

* wip: snakemake estimates, starting threads

* wip: lint and format

* wip: pass tests

* docs: readme for snakemake patching

* wip: snakemake integration tests

* test: added run snakemake rule

* feat: correctly record snakemake threads

* fix: update task runner, category/numeric naming

* Add Callable hints to parser functions

Co-authored-by: Ioannis Paraskevakos <iparask@princeton.edu>

* fix: add missing Callable import

* fix: add type hints to patching, refactor defaults

* fix: remove to_json JobData method

* docs: comment parser function

* fix: exclude extras in coverage

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Co-authored-by: Ioannis Paraskevakos <iparask@princeton.edu>

269 of 326 branches covered (82.52%)

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1874 of 2124 relevant lines covered (88.23%)

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