4
85%
master: 83%

Ran 20 Apr 2026 08:23PM UTC

Files 21

Run time 1s

Badge

Embed ▾

Committed 20 Apr 2026 08:17PM UTC coverage: 82.997%. Remained the same

Job # 24688203145.4

Build Type

push

github

Committed by

web-flow

Commit Message

Relax serializable upper bound to <2.0.0 and bump to 2.6.3 (#327)

* Relax serializable upper bound to <2.0.0 and bump to 2.6.3

serializable 1.0.0 was tooling-only (ruff/pyproject modernization) and
1.1.0 added `DataclassSerializable` — no runtime behavior change for
consumers of the existing `Serializable` base class. Ship a point
release that lets downstream projects pick up serializable 1.x without
falling back to pyensembl 2.3.4 (which has a broken GTF parser under
newer pandas).

openvax/vaxrank hit this: adding `serializable>=1.1.0` caused pip to
backtrack pyensembl all the way to 2.3.4, breaking CI. Raising the
ceiling here unblocks them (and any other downstream already on
serializable 1.x).

* Remove tautological test_dependencies_correct

The test loaded pyproject.toml and asserted its deps matched a hardcoded
duplicate of the same set, so every legitimate version bump required
editing both files. It verified nothing that pyproject.toml itself doesn't
already declare.

* Add AGENTS.md with openvax workflow guidelines

Adapted from ~/code/mhcgnomes/AGENTS.md for pyensembl's actual scripts:
no format.sh, and deploy.sh does not self-bump the version (it must be
bumped in pyensembl/version.py before running ./deploy.sh). Also adds a
"no tautological config tests" rule reflecting the test removed in the
prior commit.

Coverage Stats

1318 of 1588 relevant lines covered (83.0%)

0.83 hits per line

openvax / pyensembl / 24688203145 / 4
85%
master: 83%

README BADGES
x

Markdown

Textile

RDoc

HTML

Rst

Source Files on job python-3.10 - 24688203145.4

openvax / pyensembl / 24688203145 / 4 85% master: 83%

README BADGES x

Markdown

Textile

RDoc

HTML

Rst

Source Files on job python-3.10 - 24688203145.4

openvax / pyensembl / 24688203145 / 4
85%
master: 83%

README BADGES
x