openvax / pyensembl / 24688203145

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Relax serializable upper bound to <2.0.0 and bump to 2.6.3 (#327)

* Relax serializable upper bound to <2.0.0 and bump to 2.6.3

serializable 1.0.0 was tooling-only (ruff/pyproject modernization) and
1.1.0 added `DataclassSerializable` — no runtime behavior change for
consumers of the existing `Serializable` base class. Ship a point
release that lets downstream projects pick up serializable 1.x without
falling back to pyensembl 2.3.4 (which has a broken GTF parser under
newer pandas).

openvax/vaxrank hit this: adding `serializable>=1.1.0` caused pip to
backtrack pyensembl all the way to 2.3.4, breaking CI. Raising the
ceiling here unblocks them (and any other downstream already on
serializable 1.x).

* Remove tautological test_dependencies_correct

The test loaded pyproject.toml and asserted its deps matched a hardcoded
duplicate of the same set, so every legitimate version bump required
editing both files. It verified nothing that pyproject.toml itself doesn't
already declare.

* Add AGENTS.md with openvax workflow guidelines

Adapted from ~/code/mhcgnomes/AGENTS.md for pyensembl's actual scripts:
no format.sh, and deploy.sh does not self-bump the version (it must be
bumped in pyensembl/version.py before running ./deploy.sh). Also adds a
"no tautological config tests" rule reflecting the test removed in the
prior commit.

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