1
93%
master: 94%

Ran 16 Apr 2026 03:44AM UTC

Files 55

Run time 1s

Badge

Embed ▾

Committed 16 Apr 2026 03:40AM UTC coverage: 93.077% (+0.009%) from 93.068%

Job # 24490768466.1

Build Type

Pull #156

github

Committed by

iskandr

Commit Message

Add max_assembly_sequences circuit breaker to iterative_overlap_assembly

When the number of variant sequences after substring collapse exceeds
max_assembly_sequences (default 1000), skip the O(n^2)-per-round greedy
merge and return sequences sorted by read support. This prevents silent
hangs on high-coverage loci.

Three new tests: breaker triggers above threshold, disabled with None,
normal merge below threshold.

Fixes #151

Pull Request Pull Request #156: Fix #151: max_assembly_sequences circuit breaker

Coverage Stats

2057 of 2210 relevant lines covered (93.08%)

0.93 hits per line

openvax / isovar / 24490768466 / 1
93%
master: 94%

README BADGES
x

Markdown

Textile

RDoc

HTML

Rst

Source Files on job 24490768466.1

openvax / isovar / 24490768466 / 1 93% master: 94%

README BADGES x

Markdown

Textile

RDoc

HTML

Rst

Source Files on job 24490768466.1

openvax / isovar / 24490768466 / 1
93%
master: 94%

README BADGES
x