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Ran 16 Apr 2026 03:26AM UTC

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Committed 16 Apr 2026 03:22AM UTC coverage: 93.052% (-0.08%) from 93.127%

Job # 24490267859.1

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push

github

Committed by

web-flow

Commit Message

Make greedy merge deterministic: sort candidates by overlap size (#154)

Rewrite greedy_merge_helper to score all candidate merges, sort by
overlap size (descending) then read count, and greedily accept non-
conflicting merges (each sequence participates in at most one merge
per round). This makes the output reproducible and tends toward
better assemblies by preferring high-confidence joins.

Three new tests:
- Determinism across 20 random input shuffles (greedy_merge level)
- Determinism across 10 random shuffles (iterative_overlap_assembly)
- Verification that larger overlaps are preferred over smaller ones

Fixes #153, also covers #148

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