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cruft: update

Sync Wiswa-managed tooling: add Pyright and ty to QA (workflow jobs,
package.json scripts, Claude settings allowlist); fix Yarn cache
restore-keys in markdownlint and Prettier workflows; bump ruff-action
and switch Ruff fixes to astral-sh/ruff-pre-commit; bump cspell hooks
and dev dependency, ty constraint, and lockfiles; refresh CITATION date
and minor agent doc tweaks.

Signed-off-by: Andrew Udvare <audvare@gmail.com>

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