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Ran 12 Jan 2026 08:01PM UTC

Files 25

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Committed 12 Jan 2026 07:48PM UTC coverage: 72.028% (+1.1%) from 70.971%

Job # 20932853990.1

Build Type

Pull #161

github

Committed by

dpark01

Commit Message

Add trim_rmdup_subsamp_reads function to read_utils

Move trim_rmdup_subsamp_reads from viral-assemble/assembly.py to read_utils.py.
- Add threading support to Trimmomatic tool
- Convert manual temp file cleanup to context managers
- Add command-line interface and tests

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

Pull Request Pull Request #161: Add trim_rmdup_subsamp_reads function

Run Details

4872 of 6764 relevant lines covered (72.03%)

0.72 hits per line

broadinstitute / viral-core / 20932853990 / 1
72%
master: 72%

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master: 72%

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