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Ran 11 Jan 2026 06:27PM UTC

Files 25

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Committed 11 Jan 2026 06:14PM UTC coverage: 70.954% (+0.4%) from 70.6%

Job # 20899680251.1

Build Type

Pull #160

github

Committed by

dpark01

Commit Message

Disable sambamba merge due to segfault bug in v1.0.1

- Raise NotImplementedError in sambamba.merge() with explanation
- Skip TestSambambaMerge tests with pytest.mark.skip
- Bug occurs on both ARM emulation and native x86 platforms
- Recommend using samtools merge or Picard MergeSamFiles instead

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

Pull Request Pull Request #160: Optimize align_and_fix runtime with sambamba and skip_realign option

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0.71 hits per line

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