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Remove fs-extra dependency (#1302)

This PR removes the fs-extra dependency by implementing equivalent filesystem utilities using Node.js built-in modules. The change replaces fs-extra with custom utility functions that provide the same functionality while reducing external dependencies.

Key changes:
- Created a comprehensive utils module with filesystem operations equivalent to fs-extra
- Updated all imports to use the new utility module instead of fs-extra
- Removed fs-extra from package.json dependencies

Fix: #1300

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