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Ran 21 Jul 2025 08:00AM UTC

Files 872

Run time 46s

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Committed 21 Jul 2025 07:56AM UTC coverage: 85.719% (+0.003%) from 85.716%

Job # 16411517158.1

Build Type

push

github

Committed by

web-flow

Commit Message

add repository to nf config models (#4515)(patch)

## Description

To be merged at the same time as https://github.com/Clinical-Genomics/servers/pull/1671

The fields `repository` and `pre-run-script` are necessary for Nextflow pipelines in the pipeline integration flow to generate a request to the TowerAPI. This PR adds these fields to the pipeline config models in the cg config.

### Added

- Mandatory field `repository` for Nallo, Taxprofiler and Tomte
- Optional field `pre-run-script` initialised as empty str for Nallo, Taxprofiler and Tomte

### Changed

- Updated fixtures

Run Details

27743 of 32365 relevant lines covered (85.72%)

0.86 hits per line

Clinical-Genomics / cg / 16411517158 / 1
86%
master: 86%

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Markdown

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RDoc

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Source Files on job 16411517158.1

Clinical-Genomics / cg / 16411517158 / 1
86%
master: 86%

README BADGES
x