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master: 93%

Ran 30 Jul 2016 04:52AM UTC

Files 28

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Committed 30 Jul 2016 04:40AM UTC coverage: 93.892% (+0.3%) from 93.598%

Job # TRAVIS_BUILD_TYPE=Coverage

Build Type

push

travis-ci

Committed by

yifei-men

Commit Message

More expressive handling of format field liftovers

- Squashed merge of #91 and #92
- Format field default behavior: missing (fill with .) or zero (fill with 0); the latter is applicable for AD, former is generally applicable to most fields
- Option to ignore_non_variants (records) when populating format fields, ie to preferentially only use format field values from variant records, falling back to non-variant records only when no variant records are found for sample.
- Updated test cases and gvcf integrated tests
- Updated CLI config to apply default_type: zero to AD (default_type: missing applied by default to all other fields); ignore_non_variants: true for GQ.

Run Details

2982 of 3176 relevant lines covered (93.89%)

198769.94 hits per line

dnanexus-rnd / GLnexus / 1254 / 2
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master: 93%

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Source Files on job 1254.2 (TRAVIS_BUILD_TYPE=Coverage)

dnanexus-rnd / GLnexus / 1254 / 2 93% master: 93%

README BADGES x

Markdown

Textile

RDoc

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Rst

Source Files on job 1254.2 (TRAVIS_BUILD_TYPE=Coverage)

dnanexus-rnd / GLnexus / 1254 / 2
93%
master: 93%

README BADGES
x