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Feat/timermechanism (#3149)

* • recurrenttransfermechanism.py
  - _instantiate_attributes_after_function():  fix assignment of StabilityFunction, and force update of default_variable for output_port

* • recurrenttransfermechanism.py
  _instantiate_attributes_after_function:
  revise call to _update_default_variable to use energy.variable instead of value

* • recurrenttransfermechanism.py
  _instantiate_attributes_after_function:
  revise call to _update_default_variable to use energy.variable instead of value

* • composition.py
  - reset():  add clear_results arg

• timerfunctions.py
  - functions all written for python and pytorch... need llvm versions

• timerfunctions.py
  - Desmos plots updated

* Add Mechanism and Functions to support progression of integration along a trajectory

• timermechanism.py: sublass of IntegratorMechanism
• timerfunctions.py: subclass of TransferFunction
  - LinearTimer, AcceleratingTimer, DeceleratingTimer, AsymptoticTimer
• test_timer_mechanism.py

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Co-authored-by: jdcpni <pniintel55>

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