• Home
  • Features
  • Pricing
  • Docs
  • Announcements
  • Sign In

PrincetonUniversity / PsyNeuLink
84%
master: 85%

Build:
Build:
LAST BUILD BRANCH: feat/pec-hierarchical
DEFAULT BRANCH: master
Repo Added 24 May 2018 08:07PM UTC
Files 168
Badge
Embed ▾
README BADGES
x

If you need to use a raster PNG badge, change the '.svg' to '.png' in the link

Markdown

Textile

RDoc

HTML

Rst

LAST BUILD ON BRANCH feat/pec-hierarchical
branch: SELECT
CHANGE BRANCH
x
  • No branch selected
  • 1d31a1dfb80
  • 3382-driftonasphere-implementation
  • 46afdeb6615
  • allclose-clean
  • build-ad9a15238a
  • build-b48c2b6928
  • build-f1294bdcc9
  • cleanup
  • cleanup_ego_scripts
  • condition-names
  • dependabot/pip/devel/beartype-lt-0.22.0
  • dependabot/pip/devel/fastkde-gte-1.0.24-and-lt-2.1.4
  • dependabot/pip/devel/grpcio-lt-1.74.0
  • dependabot/pip/devel/matplotlib-gte-3.7.0-and-lt-3.10.6
  • dependabot/pip/devel/matplotlib-gte-3.7.0-lt-3.10.4
  • dependabot/pip/devel/matplotlib-lt-3.10.1
  • dependabot/pip/devel/networkx-lt-3.6
  • dependabot/pip/devel/numpy-gte-1.21.0-and-lt-2.2.6
  • dependabot/pip/devel/numpy-gte-1.21.0-and-lt-2.3.3
  • dependabot/pip/devel/numpy-gte-1.21.0-lt-2.2.6
  • dependabot/pip/devel/numpy-gte-1.21.0-lt-2.3.1
  • dependabot/pip/devel/numpy-gte-1.21.0-lt-2.3.2
  • dependabot/pip/devel/rich-gte-10.7-and-lt-14.4
  • dependabot/pip/devel/scipy-gte-1.7.3-lt-1.17
  • dependabot/pip/devel/sphinx-autodoc-typehints-lt-3.10.0
  • dependabot/pip/devel/sphinx-autodoc-typehints-lt-3.11.0
  • dependabot/pip/devel/torch-gte-1.10.0-and-lt-2.7.0
  • dependabot/pip/devel/torch-gte-1.13.0-and-lt-2.10.0
  • dependabot/pip/devel/torch-gte-1.13.0-and-lt-2.11.0
  • dependabot/pip/devel/torch-gte-1.13.0-and-lt-2.12.0
  • dependabot/pip/devel/torch-gte-1.13.0-and-lt-2.13.0
  • dependabot/pip/devel/torch-gte-1.13.0-and-lt-2.8.0
  • dependabot/pip/devel/torch-gte-1.13.0-and-lt-2.9.0
  • devel
  • doc-simple-integrator-function-escape-underscore
  • doc/IntegratorFunctions/escape-math-underscores
  • doc/additional_tutorials
  • docs/BasicAndPrimer/rename-encoder-to-ffn
  • docs/composition_randomization
  • docs/examples/fix-EVC-OCM
  • docs/spreadsheet_mods
  • feat/add_bias_node
  • feat/add_pathway_default_matrix
  • feat/autodiff/copy_pytorch_param_to_matrix
  • feat/autodiff/get_targets
  • feat/autodiff/refactor_target_specs
  • feat/autodiff/refactor_target_specs_codex
  • feat/autodiff/refactor_target_specs_km
  • feat/autodiff/torch_param_specific_lr
  • feat/autodiff/torch_param_specific_lr_DEVEL
  • feat/autodiff_add_support_for_parameter_learning_rates
  • feat/autodiff_save
  • feat/autodiff_various
  • feat/backprop_fct_with_multi_args
  • feat/batch_sequences
  • feat/binomial_distort
  • feat/collapsingbound
  • feat/composition_reset_clear_results
  • feat/compositon/additonal_pathway_syntax
  • feat/em_composition
  • feat/em_composition_EGO
  • feat/em_composition_LEARNING
  • feat/em_composition_NEW
  • feat/em_composition_REFACTOR_LEARNING_MECH
  • feat/em_composition_REFACTOR_MEMORY_TEMPLATE
  • feat/emcomposition/add_soft_max_args
  • feat/emcomposition/assign_field_weights
  • feat/emcomposition/softmax_choice_prob
  • feat/emcomposition/support_storage_function
  • feat/function_kwargs
  • feat/functions/normalization
  • feat/gru
  • feat/integrators/integrator_mech_reset_param
  • feat/kaiming-matrix
  • feat/lca/standard_output_ports_DEVEL_pec_fix
  • feat/lca/standard_output_ports_DEVEL_pec_fix_final
  • feat/learn_nested_direct
  • feat/learning_nested
  • feat/log/nparray_executions
  • feat/models/EGO_MDP
  • feat/models/EGO_MDP_REFACTOR_ATTENTION
  • feat/onehot_tie_index
  • feat/pec-dask-mle
  • feat/pec-hierarchical
  • feat/pec_cond_all
  • feat/pec_hist
  • feat/pec_optuna_study
  • feat/pec_optuna_study_rebased
  • feat/reset_functions
  • feat/thread_config
  • feat/timermechanism
  • feat/torch_varseq
  • fit2
  • fit2-compiled
  • fit2-compiled-bugs
  • fix-softmax
  • fix/_parse_port_spec_port_as_sender_or_recvr
  • fix/add_obj_mech_warning
  • fix/autodiff_mult_output_ports
  • fix/bad_likelihood_warn
  • fix/comp_warning_no_afferents
  • fix/composition_existing_projections
  • fix/contentaddressablememory_empty_entry
  • fix/control_allocation_JDC
  • fix/default_control_allocation
  • fix/drift-on-a-sphere-scalar-noise-mechanism-wrap
  • fix/ego_update_figs
  • fix/emcomposition/field-index-alignment
  • fix/emcomposition_fieldweights_assignment
  • fix/emcomposition_learnable_projections
  • fix/fhn-output-port-index
  • fix/input_port_COMBINE
  • fix/input_port_spec_w_mapping_projection
  • fix/lccontrolmechanism_objectivemechanism
  • fix/linearcomb_jacobian
  • fix/mapping_projection_matrix_keyword_assignment
  • fix/matrix_transform_l0
  • fix/one_hot_max_indicator
  • fix/onehot-prob-cumsum-edge
  • fix/output_port_execution_count_v2
  • fix/pec_exec_controller
  • fix/pec_inputs_mapping_bug
  • fix/pec_seed
  • fix/projections/dual_projections_between_mechs
  • fix/safe_equals
  • fix/softmax_and_relu_derivatives
  • fix/stab_flex_pec_bug
  • fix/standard_output_ports_calculate
  • fix_optuna_rng
  • ipynp/502B
  • ipynp/502B-correct-add-noise-function
  • ipynp/502B-correct-use-summed-matrix
  • ipynp/502B-fix-lab1-x-to-X
  • ipynp/502B-use-summed-matrix
  • jongkees2023
  • jvesely/ci
  • jvesely/ci-enabled
  • jvesely/custom-runners
  • jvesely/deps/torch
  • jvesely/fix/docstyle
  • jvesely/macos-self
  • jvesely/test/worksteal
  • master
  • mode/add_botvinick_conflict_monitoring
  • model/fix-botvinick-conflict-monitoring
  • model/fix-cohen-huston
  • models-update-docs
  • models/ego/bandit
  • models/ego/csw
  • models/ego/use_emcomposition
  • models/nback
  • models/nback_CAM_FFN
  • models/rumelhart-script-fix-targets
  • nback
  • origin/dependabot/pip/devel/matplotlib-lt-3.10.1
  • parameter-bool-as-number
  • patch/autodiff/docs_re_modules
  • patch/autodiff/pytorch_custom_optimization
  • patch/autodiff_pnl_showgraph
  • patch/autodiffcomposition-show-graph-jupyter
  • patch/bias_nodes
  • patch/composition/duplicate_target_warnings
  • patch/composition/objective_mech_as_output_node
  • patch/convert_to_list
  • patch/em_memory_template
  • patch/emcomposition/field_memories
  • patch/emcomposition/field_memory_indices
  • patch/emcomposition/forbid_add_projection
  • patch/fix_autodiff_pytorch_dependency
  • patch/fix_show_graph_nested_node_to_nested_node
  • patch/fixes_for_KADMLP
  • patch/get_composition_for_node
  • patch/get_composition_for_node_fix
  • patch/grucomposition
  • patch/lcamechanism/make_matrix_params_nonmodulable
  • patch/nested_comps
  • patch/port/enhance_error_for_bad_mod_param
  • patch/transferfunctions/logistic_offset
  • patch/transformfunctions/MatrixTransform
  • pec_doc_fixes
  • pec_optuna
  • py310_fixes
  • pytorch_batch
  • refactor/EGO_move_figs
  • refactor/autodiff/track_pnl
  • refactor/autodiff_and_emcomposition
  • refactor/composition/mech_constructor_callback
  • refactor/emcomposition/fields_class
  • refactor/emcomposition_field_handling
  • refactor/emcomposition_mechs_and_concatenate
  • refactor/emcomposition_none_fieldweights
  • refactor/emcomposition_softmax_after_dot
  • refactor/emcomposition_tranfser->processingmech
  • refactor/exec_mode_pytorch
  • refactor/exec_mode_pytorch_FULL
  • refactor/execution_mode_COMPILED
  • refactor/lccontrolmechanism_ctl_signals
  • refactor/learning_pathways_using_ports
  • refactor/linearmatrix_>matrixtransform
  • refactor/linearmatrix_matrixtransform
  • refactor/matrixtransform_pytorch
  • refactor/onehot_options
  • refactor/pytorchwrappers/execute_node
  • refactor/transferfunction/scale_and_offset
  • remove_autograd
  • remove_typecheck
  • revert-2533-codeql
  • revert-2751-master-devel
  • tentative-learning-branch
  • test/autodiff_without_torch
  • test_ci
  • test_new_runners

06 Jul 2026 06:15PM UTC coverage: 83.906% (-0.005%) from 83.911%
28814065630

push

github

aryan-pan
Prototype neural likelihood estimation against the KDE simulation likelihood

nle/: MNLE-style mixture density network over (parameters, trial
features) -> p(choice, rt), trained on simulator draws, plus an exact
Navarro-Fuss reference density. On the DDM benchmark, EM with the exact
or neural likelihood matches full-Bayes HSSM per-subject accuracy (RMSE
0.084 vs 0.086), attributing the KDE-EM gap to KDE noise rather than the
Laplace EM, at ~60x less wall time. stabflex_nle extends the test to the
stability-flexibility composition: training data generated by sweeping
theta through a worker-cached PEC (rebuilding a composition per config
leaks PNL/LLVM state until dask pauses the workers) with the sequential
gen -> train -> em pipeline in the SLURM script.

11060 of 14440 branches covered (76.59%)

Branch coverage included in aggregate %.

37807 of 43800 relevant lines covered (86.32%)

0.86 hits per line

Relevant lines Covered
Build:
Build:
43800 RELEVANT LINES 37807 COVERED LINES
0.86 HITS PER LINE
Source Files on master
  • Tree
  • List 168
  • Changed 2
  • Source Changed 0
  • Coverage Changed 2
Coverage ∆ File Lines Relevant Covered Missed Hits/Line Branch Hits Branch Misses

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
28814065630 feat/pec-hierarchical Prototype neural likelihood estimation against the KDE simulation likelihood nle/: MNLE-style mixture density network over (parameters, trial features) -> p(choice, rt), trained on simulator draws, plus an exact Navarro-Fuss reference density. On... push 06 Jul 2026 07:37PM UTC aryan-pan github
83.91
28773583651 master Devel (#3462) build currently broken due to dependency `modeci_mdf`, see #3461 push 06 Jul 2026 08:11AM UTC web-flow github
84.59
28762971779 devel Enable codestyle W605, and docstyle D414 checks (#3581) push 06 Jul 2026 03:16AM UTC web-flow github
83.91
28732437426 master Devel (#3462) build currently broken due to dependency `modeci_mdf`, see #3461 push 05 Jul 2026 07:45AM UTC web-flow github
84.59
28697897698 master Devel (#3462) build currently broken due to dependency `modeci_mdf`, see #3461 push 04 Jul 2026 07:34AM UTC web-flow github
84.59
28643437944 master Devel (#3462) build currently broken due to dependency `modeci_mdf`, see #3461 push 03 Jul 2026 07:53AM UTC web-flow github
84.59
28571117360 master Devel (#3462) build currently broken due to dependency `modeci_mdf`, see #3461 push 02 Jul 2026 07:47AM UTC web-flow github
84.59
28499563253 master Devel (#3462) build currently broken due to dependency `modeci_mdf`, see #3461 push 01 Jul 2026 08:03AM UTC web-flow github
84.59
28426083525 master Devel (#3462) build currently broken due to dependency `modeci_mdf`, see #3461 push 30 Jun 2026 07:58AM UTC web-flow github
84.59
28397496882 feat/pec-hierarchical Merge remote-tracking branch 'origin/devel' into feat/pec-hierarchical # Conflicts: # psyneulink/core/compositions/parameterestimationcomposition.py push 29 Jun 2026 08:49PM UTC aryan-pan github
83.91
See All Builds (7946)
  • Repo on GitHub
STATUS · Troubleshooting · Open an Issue · Sales · Support · CAREERS · ENTERPRISE · START FREE · SCHEDULE DEMO
ANNOUNCEMENTS · TWITTER · TOS & SLA · Supported CI Services · What's a CI service? · Automated Testing

© 2026 Coveralls, Inc