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Bump to Python 3.9, Big typing updates (#2963)

* Bump minimum python version to 3.9
Update dependencies minimum package versions to post-3.9 versions.
Upgrade latest pyparsing
Update to latest MyPy
Update to latest Black
Re-issue new Poetry lockfile

* First round of relatively simple typing updates for python 3.9 style type annotations

* Change _SubjectType, _PredicateType, and _ObjectType typing to more restictive, and fix the fallout

* Remove python 3.8 from github actions, add python 3.12 to github actions.

* Change minimum lxml version for Python 3.12 compat.

* Fix deprecated typing warnings in tests suite.

* Don't gate QuotedGraph behind TYPE_CHECKING.

* Fix where some tests were broken due to updated typing (auto-replace mistakes)

* remove unused imports in other parts of the codebase

* Change QuotedGraph to be an IdentifiedNode, that means that its automatically included in _subjectType, and we don't need a forward-definition for QuotedGraph in _subjectType alias.

* More fixes to docs generation

* Fix sphinx autodocs generation after all the typing changes

* Ensure Pyparsing in Dockerfile and in Devtools min versions matches that set in PyProject toml

* Put the TypeAlias import behind the TYPE_CHECKING gate

* Bump versions of pre-commit checks to match the versions used in pyproject.toml

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