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MPES reader changes from mpes refactoring (#203)

* Definitions upgraded to latest mpes-refactor

* Adapt vscode settings and update definitions, again

* Updates definitions

* Updates config file

* Use nested config file structure

* flatten_json cleaned up

* Updates definitions

* Renames DATA[data] to just data

* Use beam_TYPE and source_TYPE

* Add flag to reatin link dicts for flatten_json

* Properly resolve upper/lower case group fields

* Fixes a lookup error when keys have been filled in template with a different name

* Fixes the case where the reader sends back a template entry with the concept name included

* Correct coeffs path for raw data file

* Fix path in data dict test

* Update mpes reference file

* Updates reference nexus log

* Fix nexus regression file

* Don't use removeprefix to support py3.8

* Move pressure_gauge to correct location

* Corrects link to pressure_gauge

* Updates reference mpes test log

* Updates path for eln mapping

* Fixes eln mapping

* Skip test for xps reader

* Fix typos

* Updates generated eln files

* Fix undocumented @units if key is documented

* Updates mpes reference file

* Removed applied fields in calibrations

* Removed photon_energies from source

* Nest electronanalyser under instrument

* Use momentum_resolution and spatial_resolution as named concepts

* Fix eln mapping for spatial and momentum resolution in electronanalyser

* Updates mpes reference file

* Renamings

* Renamings in NXsample

* Properly deal with undocumented @units as discussed w/ @sherjeelshabih

* Updates mpes reference file

* Correctly map chemical formula

* Adds additional mappings

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Co-authored-by: Sherjeel Shabih <shabihsherjeel@gmail.com>

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Source Files on job 7608498774.3