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Ran 17 Oct 2023 05:12PM UTC

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Committed 17 Oct 2023 04:59PM UTC coverage: 0.0%. First build

Job # 6550424108.1

Build Type

push

github

Committed by

web-flow

Commit Message

migration from Travis CI to GitHub Actions (#31)

* commit changes beginning migration from Travis CI to GitHub Actions

* update GitHub cache action

update GitHub cache action (v2 -> v3) https://github.com/marketplace/actions/cache
in connection with deprecation of the save-state command ( https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/ )

* update docker login action v1 -> v2

* bump docker/setup-buildx-action v1 -> v2

* update GitHub checkout action v2 -> v3

* update GitHub setup-python action v2 -> v4

* update docker/setup-buildx-action@v1 -> v2 in docs build action

* bump ReadTheDocs python version 3.6 -> 3.8

* update viral-baseimage to 2.2.0 containing upgrade from Ubuntu 18.04 LTS (bionic) to Ubuntu 22.04 LTS (jammy)

* remove Travis CI-related files

* s/viral-assembly/viral-classify/

* bump viral-core to 2.2.1

bump Actions container cache version;  add perl-libwww-perl to env2 deps;  comment out conda strict channel priority

* Disable KrakenUniq (for now)

Disable KrakenUniq from future versions for now, pending conda rebuild of @yesimon's fork and its dependencies

* restore strict channel priority for env2

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