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dependencies: Update to numpy<1.24.4 (#2693)

Numpy 1.24 removes few deprecated features and introduces new deprecations;
* construction of rugged arrays now throws ValueError.
    * Update `safe_create_np_array` to handle both the original DeprecationWarning and the new ValueError
    * Extract values of all mechanisms in `test_save_state_before_simulations` to avoid rugged array
* Conversion from Python integer types warns on range overflow.
    * Switch representation of ctype integers to unsigned. Most uses expect unsigned results.

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