3
87%
devel: 87%

Ran 12 Feb 2016 04:01PM UTC

Files 148

Run time 6s

Badge

Embed ▾

Committed 12 Feb 2016 03:58PM UTC coverage: 87.347% (+0.6%) from 86.796%

Job # python=3.4 CONDA_PY=34 CONDA_NPY=19

Build Type

push

travis-ci

Committed by Martin K. Scherer

Commit Message

Merge pull request #671 from marscher/devel_refactor_transformer_rebased_on_devel

Coordinates package uses new design for Estimators, Readers and Iterators. 

* User-API has been preserved.
* Estimators are sklearn compatible.
* Support for fragmented trajectories (grouped files will be treated like one big trajectory).
* TICA and PCA use covartools extension to calculate covariances/mean of data in an optimized
  way, which saves one pass over the data.
* Transformer (which used to be the super class of nearly every class in coordinates) has been
   renamed to StreamingTransformer and contains only necessary stuff.
* DataSource is new interface for Pipeline elements.
* DataSource is an Iterable, which provides streaming iterator access to underlying data.
* Iterators are able to change chunk size and stride during iteration (iterators store their own context).
* Random access strategies implemented for supported readers (data in memory, 
  random accessible MD formats) by slicing patterns.

Run Details

10866 of 12440 relevant lines covered (87.35%)

0.87 hits per line

markovmodel / PyEMMA / 1637 / 3
87%
devel: 87%

README BADGES
x

Markdown

Textile

RDoc

HTML

Rst

Source Files on job 1637.3 (python=3.4 CONDA_PY=34 CONDA_NPY=19)

markovmodel / PyEMMA / 1637 / 3 87% devel: 87%

README BADGES x

Markdown

Textile

RDoc

HTML

Rst

Source Files on job 1637.3 (python=3.4 CONDA_PY=34 CONDA_NPY=19)

markovmodel / PyEMMA / 1637 / 3
87%
devel: 87%

README BADGES
x