wwu-mmll / confound_corrected_cpm
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NilsWinter 
Merge develop for 0.7.0 release

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

883 of 921 new or added lines in 22 files covered. (95.87%)

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2527 of 2883 relevant lines covered (87.65%)

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36440344706 main Merge develop for 0.7.0 release Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com> push NilsWinter github
87.65
36440347437 develop Merge develop for 0.7.0 release Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com> push NilsWinter github
87.65
36438974006 develop Release 0.7.0: changelog, citation, and a clean install on all three OSes CHANGELOG [Unreleased] becomes [0.7.0] -- 2026-09-28; CITATION.cff was still at 0.3.0 and gains a date-released. package_smoke.yml builds the wheel and installs it into a ... push NilsWinter github
87.65
36436987593 develop RELEASE_PLAN: decisions #1/#4/#6/#8 made; what is left before tagging Drops the finished items (locale codec, as_tensor aliasing, the __main__ sweep -- only simulate_sem's self-contained demo remains -- and the p-value approximation), turns the p... push NilsWinter github
87.65
35752598160 develop Tests: apply the rest of the audit — 287 -> 249 The judgement-call half of the audit, which was waiting on a decision. Deleted 15 tests, each covered in full by one that does strictly more: test_chaining (x4 model classes -- test_fit_predict_sha... push NilsWinter github
87.39
35750419597 develop Drop TEST_AUDIT.md; the decisions it still carries move into RELEASE_PLAN Nils: not something he wants in the repo. The audit was a working document for one decision, and the parts that had been acted on were already history. What it still carri... push NilsWinter github
87.39
35743133739 develop RELEASE_PLAN: CI is green on all 13 jobs; drop the confirmation item The convention this file now states is to delete an item when it lands rather than mark it done, so the verification step goes rather than turning into a checkmark. What is left... push NilsWinter github
87.28
35742708320 develop Audit the test suite: the count and the runtime are different problems RELEASE_PLAN.md's test-suite section was written from a skim and got two things wrong, both now corrected against the code: TestTaskTypeDetection is not covered by test_valida... push NilsWinter github
87.28
35740804098 develop RELEASE_PLAN: only open work, and say where the plan lives The file had drifted into a changelog: completed items with dates, a "Code health" section whose body was a paragraph about what had been finished, and a released-versions list doing the ... push NilsWinter github
87.28
35736801717 develop Phase 10: make the report say which analysis produced it Phase 8 made confound control two run-level choices, which means one report is one cell of the 2x2 and nothing can be compared side by side inside it. That makes it the report's job to say ... push NilsWinter github
87.28
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