• Home
  • Features
  • Pricing
  • Docs
  • Announcements
  • Sign In

pirl-unc / mhcgnomes
90%

Build:
DEFAULT BRANCH: main
Repo Added 27 Mar 2024 05:11AM UTC
Token PunHWfSsDHCKu2IcNBx1mVoOFlcxL1Pgz regen
Build 385 Last
Files 42
Badge
Embed ▾
README BADGES
x

If you need to use a raster PNG badge, change the '.svg' to '.png' in the link

Markdown

Textile

RDoc

HTML

Rst

LAST BUILD ON BRANCH main
branch: SELECT
CHANGE BRANCH
x
Sync Branches
  • No branch selected
  • 3.18.0-mhcseqs-wishlist
  • add-agents-md
  • add-intermediate-clade-nodes
  • add-mkdocs-gh-pages
  • add-species-and-gene-aliases
  • add-species-fix-genes
  • add-unknown-species-batch
  • agent/add-cli-version-flag
  • agent/caja-ps2-pseudogene
  • agent/cross-species-gene-metadata
  • agent/data-subcommands
  • agent/external-data-cache
  • agent/faster-cold-allele-parsing
  • ancestor-wins-shared-alias
  • archosaur-gene-expansion
  • bare-gene-lineage-rule
  • batch-add-species-v3-23
  • batch-species-and-genes
  • batch-species-intermediate-taxa
  • blank-haplotype-locus
  • canonical-prefix-policy
  • chpi-from-uniprot
  • class-shorthand
  • combined-v3.12.0
  • contested-prefix-diagnostics
  • curate-more-mhcseqs-obvious-cases
  • curate-nhp-provenance
  • curate-prefix-provenance
  • curate-water-buffalo-loci
  • curation-ipd-imgt-gaps
  • deploy-verifies-pypi
  • docs-links-and-references
  • docs-pages-release-artifacts
  • docs-reorg-v3.14.1
  • document-prefix-scope-tree
  • establish-la-prefixes
  • expose-species-provenance
  • fill-clade-gaps-numbered-loci
  • finish-todo-list
  • fix-class2-pairing-non-human
  • fix-dla-88-field-width
  • fix-gene-class-misannotations
  • fix-mhc-roman-numeral-and-dot-aliases
  • fix-mhcseqs-parse-failures
  • fix-mhcseqs-residual-patterns
  • fix-missing-allele-ontology
  • fix-parsing-bugs-v3.30.0
  • fix-primata-human-taxonomy
  • fix-remaining-gene-gaps
  • fix-remaining-genes
  • fix-remaining-parser-leaks
  • fix-saha-slash-ambiguity
  • fix-species-inference-103-105
  • fix-species-strict-v3.9.1
  • fix-sticky-species-parsing
  • fix-tree-gaps-v3.12.1
  • fix/193-preserve-alias-mutations
  • fix/194-chain-mutation-selectors
  • genbank-prefix-sweep
  • gene-class2-chain
  • gene-name-case
  • group-flag-and-contested-prefixes
  • group-node-negatives
  • hla-cw16
  • hla-name-only-genes
  • hyphenated-common-names
  • immutable-data-objects
  • import-evidenced-aliases
  • ingest-mhcseqs-genes
  • ipd-designation-reservations
  • ipd-namespace-sweep
  • lesson-comment-vs-code
  • longer-species-names
  • lr-plus-notation
  • main
  • mhcseqs-gap-compat
  • more-species-and-aliases
  • normalize-allele-field-widths
  • novel-prefix-4x4-standard
  • ontology-audit-fixes
  • ontology-cleanup
  • ontology-provenance-dedup
  • paper-scraping-tools
  • parse-mouse-mhc-class2-variants
  • place-primates-under-genus
  • plan-nonmammal-mhc-expansion
  • prefix-provenance
  • preserve-wip-app-and-tasks
  • rabbit-class1-loci
  • read-or-drop-dead-keys
  • reject-non-mhc-genes
  • release-infra
  • release-on-tag-trusted-publishing
  • rule-abiding-prefixes
  • saha-dft2-alleles
  • serotype-provenance
  • session-lessons
  • sla-haplotypes
  • sla-lr-haplotypes
  • species-latin-name-identity
  • split-nhp-from-primata
  • taxonomy-cleanup-v3.13.0
  • todo-cleanup-and-chicken
  • turkey-negative
  • use-ipd-cetacean-designations
  • v2.0
  • v2.0.2
  • v2.0.3
  • v2.0.4
  • v2.0.5
  • v2.0.6
  • v2.0.7
  • v2.0.8
  • v2.0.9
  • v3.0.0
  • v3.0.1
  • v3.0.2
  • v3.1.0
  • v3.1.1
  • v3.14.0-species-genes
  • v3.2.0
  • v3.3.0
  • v3.4.0

23 Sep 2026 11:36AM UTC coverage: 89.761% (+0.01%) from 89.748%
35855527008

push

github

web-flow
Merge pull request #198 from pirl-unc/fix/194-chain-mutation-selectors

Preserve chain-selected mutations on class-II pairs (3.64.4)

4357 of 4854 relevant lines covered (89.76%)

0.9 hits per line

Relevant lines Covered
Build:
Build:
4854 RELEVANT LINES 4357 COVERED LINES
0.9 HITS PER LINE
Source Files on main
  • Tree
  • List 42
  • Changed 1
  • Source Changed 0
  • Coverage Changed 1
Coverage ∆ File Lines Relevant Covered Missed Hits/Line

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
35855527008 main Merge pull request #198 from pirl-unc/fix/194-chain-mutation-selectors Preserve chain-selected mutations on class-II pairs (3.64.4) push 23 Sep 2026 11:39AM UTC web-flow github
89.76
35854858986 fix/194-chain-mutation-selectors Merge f3daad1ae into b276be94c Pull #198 23 Sep 2026 11:33AM UTC web-flow github
89.76
35774709793 main Merge pull request #195 from pirl-unc/fix/193-preserve-alias-mutations Preserve explicit mutations during allele alias normalization push 22 Sep 2026 07:38PM UTC web-flow github
89.75
35774143840 fix/193-preserve-alias-mutations Merge da2fcb664 into 8d8f30a3e Pull #195 22 Sep 2026 07:33PM UTC web-flow github
89.75
33544111785 main Merge pull request #187 from pirl-unc/fix-saha-slash-ambiguity Prevent Saha ambiguity labels from becoming Pair (#186) push 01 Sep 2026 06:33PM UTC web-flow github
89.74
33543741167 fix-saha-slash-ambiguity Merge 3df85bc24 into b031b7453 Pull #187 01 Sep 2026 06:29PM UTC web-flow github
89.74
33540135462 main Merge pull request #184 from pirl-unc/lr-plus-notation Correct what the Lr- tables say about "+" (#162) push 01 Sep 2026 05:52PM UTC web-flow github
89.66
33535374083 lr-plus-notation Merge 7b2089e20 into 6389949f4 Pull #184 01 Sep 2026 05:04PM UTC web-flow github
89.66
33534855184 main Curate the low-resolution (Lr-) swine haplotype series (#162) (#183) I had twice reported this data as paywalled: PMC has no full text for Ho et al. 2009 or Hammer et al. 2020, and the cohort papers' PMC HTML carries only per-line counts. What I ... push 01 Sep 2026 04:59PM UTC web-flow github
89.66
33534468861 sla-lr-haplotypes Merge caec68f88 into 052730dba Pull #183 01 Sep 2026 04:56PM UTC web-flow github
89.66
See All Builds (365)

Badge your Repo: mhcgnomes

We detected this repo isn’t badged! Grab the embed code to the right, add it to your repo to show off your code coverage, and when the badge is live hit the refresh button to remove this message.

Could not find badge in README.

Embed ▾
README BADGES
x

If you need to use a raster PNG badge, change the '.svg' to '.png' in the link

Markdown

Textile

RDoc

HTML

Rst

Refresh
  • Settings
  • Repo on GitHub
STATUS · Troubleshooting · Open an Issue · Sales · Support · CAREERS · ENTERPRISE · START FREE TRIAL · SCHEDULE DEMO
ANNOUNCEMENTS · TWITTER · TOS & SLA · Supported CI Services · What's a CI service? · Automated Testing

© 2026 Coveralls, Inc