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LAST BUILD ON BRANCH fix/256-cli-input-errors

branch: fix/256-cli-input-errors

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• fix/256-cli-input-errors
• add-agents-md
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• feat/226-cell-umi-allele-evidence
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• feat/306-allele-interpretations
• feat/324-protein-hypothesis-export
• feat/350-linked-splice-paths
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• feat/387-germline-trans
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• feat/read-end-annotation
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• fix-126-self-subtraction-insertion
• fix-127-mapq-none-typeerror-v2
• fix-130-collapse-substrings-break
• fix-131-n-reads-not-skipped
• fix-132-max-protein-sequences-cap
• fix-134-cli-soft-clipped-flag
• fix-136-mutable-defaults
• fix-137-logger-warn-deprecated
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• fix-152-subclonal-allele-crash
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• fix-read-evidence-boundaries
• fix/122-ensembl-release
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• fix/258-csv-consistency
• fix/301-gallery-readme
• fix/345-version-guard
• fix/353-orientation-flags
• fix/358-coveralls-python
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• fix/361-mapq-255-unique-default
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• fix/364-sv-helpers
• fix/393-nested-subclone-trans
• fix/399-fixture-record-references
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• fix/align-variant-sequence-assembly-default
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• fix/cache-ensembl-ci-downloads
• fix/cli-api-defaults
• fix/compatible-placement-phasing
• fix/cross-platform-read-evidence
• fix/dense-splice-ambiguous-priority
• fix/deploy-version-bump
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• fix/fusion-paired-mate-identity
• fix/germline-unmerged-mates
• fix/insertion-boundary-reference
• fix/intergenic-sv-orfs
• fix/length-filter-respects-read-support
• fix/library-scoped-umi-evidence
• fix/observed-fusion-footprints
• fix/phasing-other-allele-conflicts
• fix/preserve-contained-assemblies
• fix/read-group-phasing
• fix/read-observation-identity
• fix/reference-dataset-identity
• fix/reject-symbolic-sv-inputs
• fix/release-interpreter-consistency
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• fix/retain-required-reference-context
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• fix/sid-record-identity-cleanup
• fix/splice-compatible-overlap-assembly
• fix/supplementary-path-phasing
• fix/sv-breakpoint-acquisition
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• fix/sv-original-record-identity
• fix/sv-preserve-direct-orfs
• fix/sv-rna-long-read-evidence
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• release/three-fusion-fixtures-1.21.11
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Build # 36024978486

Build Type

Pull #370

github

Committed by web-flow

Commit Message

Merge 1dda85ecb into 7ddf1ae9a

Pull Request Pull Request #370: Report command-line input problems as one-line usage errors (1.27.1)

Coverage Stats

101 of 107 new or added lines in 16 files covered. (94.39%)

1 existing line in 1 file now uncovered.

6579 of 6873 relevant lines covered (95.72%)

0.96 hits per line