openvax / isovar

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LAST BUILD ON BRANCH handle-intergenic-effects

branch: handle-intergenic-effects

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• handle-intergenic-effects
• master
• refactor-cli
• add-columns-to-output-args
• run-integration-tests
• more-rna-filtering-options
• edit-distance-from-reference-protein-sequence
• exit-early-if-no-reference-contexts
• explicit-phasing-of-somatic-variants
• speed-up-LocusRead-construction
• multiple-phasing-types
• fix-mismatch-count-after-variant
• add-slice-method-to-protein-sequence
• no-more-py27-on-travis

Build # 714

Build Type

Pull #105

travis-ci

Committed by web-flow

Commit Message

allow silent mutations to contribute to reference transcripts

Pull Request Pull Request #105: use varcode's effects() helper to get handling of intergenic effects

Run Details

12 of 12 new or added lines in 2 files covered. (100.0%)

1825 of 1969 relevant lines covered (92.69%)

1.85 hits per line