jakirkham / dask-distance

100%

master: 100%

LAST BUILD ON BRANCH opt_gen_pdist_diag_2

branch: opt_gen_pdist_diag_2

CHANGE BRANCH

x

Reset

• opt_gen_pdist_diag_2
• add__atleast_2d
• add__bool_dist
• add__concatenate
• add__pycompat
• add_accumulate
• add_atop_ravel
• add_bool_dist
• add_bool_dist_title
• add_braycurtis
• add_canberra
• add_cdist
• add_chebyshev
• add_cityblock
• add_compat
• add_correlation
• add_cosine
• add_dice
• add_euclidean
• add_hamming
• add_izip
• add_jaccard
• add_kulsinski
• add_mahalanobis
• add_minkowski
• add_pdist
• add_rogerstanimoto
• add_russellrao
• add_seuclidean
• add_sokalmichener
• add_sokalsneath
• add_sqeuclidean
• add_squareform
• add_wminkowski
• add_yule
• adj_cdist_asarray
• adj_hamming
• adj_hamming_sum
• broadcast_uv_wrapper
• ci_run_flake8
• cmp_many_bool_arrays
• comb_bool_cmp
• cond_def_pdist_kwargs
• d_zeros_array_squareform
• dist_more_metrics
• dist_use_kwargs
• dists_doc_more_kwargs
• drop_broadcast_repeat
• drop_cdist_fin_rchk
• drop_dask_ver_chck
• drop_dice_docs_dot
• enforce_1d_bool_arrs
• fix_euclidean_doc
• fix_license_typo
• fix_mahalanobis_doc_typo
• fix_pdist_bug
• fix_pdist_metric_def
• fix_ravel_chks
• fix_seuclidean_equ
• fix_utils_tst_name
• flake8_fixes
• master
• opt_dist_ident
• opt_gen_pdist_diag
• opt_gen_pdist_diag_recrsv
• opt_pdist_diag
• opt_squareform
• pdist_doc_more_kwargs
• pdist_grp_cdist_comps
• pdist_knwn_shape
• pdist_norm_arr
• pdist_store_mask
• pdist_use_pycompat_range
• ravel_no_concat
• rchk_lst_z_squareform
• ref_broadcast_uv
• ref_math_expr
• rename_uv_mtx
• req_numpy_dask
• req_scipy_tsts
• rfrsh_dim_check
• simp_cdist_apply
• sp_case_ravel
• sty_fix__cdist_apply
• support_1pt_pdist
• temp
• tidy_formulae
• tst_2d_more_shapes
• tst_cdist_shapes
• tst_wrong_lengths
• tsts_w_kw
• tweak_cdist_conv
• tweak_tst_comp
• use_cookiecutter
• use_mathjax_docs
• use_minkowski_dist_mat
• use_rel_imp
• v0.1.0
• v0.2.0
• vendor_indices
• wrap_braycurtis_doc

Build # 654

Build Type

push

travis-ci

Committed by jakirkham

Commit Message

Optimize pdist's handling of diagonal chunks

Make use of `cdist` for computing the bulk of the results for `pdist`.
However drop all duplicate chunks on the opposite side of the diagonal.
Though keep all chunks on the right side of the diagonal. As for any
chunks that land on the diagonal, break them up into pieces that include
non-duplicated pairs and pass those through `cdist` as well. Take all of
these results and flatten them so that they can be concatenated into one
big result.

Run Details

353 of 353 relevant lines covered (100.0%)

3.97 hits per line