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crmackay / gobioinfo
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LAST BUILD BRANCH: new-bayesian-alignment
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Repo Added 27 Oct 2015 03:19PM UTC
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travis-ci

crmackay
traceback, prob calc/test, and alignment representation

- fixed traceback so that it is reliable
- fixed a bug with forward P(S|L’) probability calculations
- added P(L|S) and P(L’|S) calculations and test
- added a print_alignment function to pretty print an alignment

… still much to do…

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Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
22 new-bayesian-alignment traceback, prob calc/test, and alignment representation - fixed traceback so that it is reliable - fixed a bug with forward P(S|L’) probability calculations - added P(L|S) and P(L’|S) calculations and test - added a print_alignment function to pr... push 05 Nov 2016 10:44PM UTC crmackay travis-ci pending completion  
21 new-bayesian-alignment working version with odds-ratios... push 29 Oct 2016 03:43PM UTC crmackay travis-ci pending completion  
20 new-bayesian-alignment completed traceback functionality push 27 Oct 2016 05:55PM UTC crmackay travis-ci pending completion  
19 new-bayesian-alignment updating c implementation - first working prototype version of the algorithm - still missing file io, length checks, threading etc. push 27 Oct 2016 04:50PM UTC crmackay travis-ci pending completion  
18 new-bayesian-alignment semi-working implementation - implemented a whole new dynamic programming algorithm that abandons the edit distance paradigm and the like (NW alignment) in favor of what I think is a novel algorithm that calculates probabilities.. - also implemen... push 20 Oct 2016 02:29AM UTC crmackay travis-ci pending completion  
15 master updating travis version push 27 Jun 2016 07:25PM UTC crmackay travis-ci pending completion  
13 master cleaning up io push 28 Oct 2015 10:29PM UTC crmackay travis-ci pending completion  
12 master fixing alignment notes push 28 Oct 2015 03:57PM UTC crmackay travis-ci pending completion  
11 master remove tip for now...seems to be a problem with goveralls push 27 Oct 2015 09:43PM UTC crmackay travis-ci pending completion  
10 master add go tip push 27 Oct 2015 09:36PM UTC crmackay travis-ci pending completion  
See All Builds (16)
  • Repo on GitHub
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