broadinstitute / gamgee

LAST BUILD ON BRANCH jt_rbs_vb2

branch: jt_rbs_vb2

CHANGE BRANCH

x

Reset

• jt_rbs_vb2
• ak_fix_samples_to_include_in_variant_reader
• ak_hadle_samples_in_variant_reader
• ak_ignore_emacs_temporaries
• ak_n_samples_error
• bh_IndividualFieldValueIterator_minus
• bh_select_if_doc
• bh_vimbup_gitignore
• boost-build
• db_iterator_patch
• db_read_groups
• dr_VariantBuilderMultiSampleVector_bounds_checking
• dr_copy_foghorn_submodule_update_script
• dr_fix_IndividualFieldValue_missing
• dr_fix_additional_reader_segfaults_on_nonexistent_files
• dr_fix_float_missing_check
• dr_fix_genotype_encoding_of_vector_ends
• dr_fix_genotype_handling_of_vector_end
• dr_fix_includes_in_merged_lut
• dr_improve_variant_builder_doxygen
• dr_monolithic_gamgee_header
• dr_prevent_gt_field_set_using_integer_setters
• dr_remove_header_deep_copying
• dr_remove_obsolete_call_in_merge_variant_headers
• dr_rename_samtag_is_missing
• dr_rev_htslib_and_remove_synced_reader_hack
• dr_rev_htslib_nov6
• dr_test_multi_sample_vector_with_max_size_zero
• dr_variant_builder
• dr_variant_header_builder_case_sensitivity_bug
• dr_variant_missing_function
• dr_variantreader_fix_segfault_on_nonexistent_file
• dr_vb_auto_encode_genotypes
• dr_vb_flattened_vector_helper_functions
• htslib_revup
• intel_boost-build
• intel_clang_fix
• intel_header_field_length
• intel_individual_field_value_iterator_increment
• intel_int_cast_missing_end_fix
• intel_iterator_inc_dec
• intel_multi_iterator_fix
• intel_resize_lut
• intel_signed_comparison
• intel_signed_comparison_fixes
• intel_test_branch
• intel_var_header_merger
• intel_vector_end
• intel_whitespace_fix
• jt_VariantHeaderBuilder_212
• jt_alignment_stop
• jt_allele_strings
• jt_api_226
• jt_bcf_close
• jt_comments
• jt_compression_161
• jt_directories
• jt_field_type
• jt_file_index
• jt_front_back
• jt_gamgee_h
• jt_gitignore
• jt_individual_field_value_missing
• jt_kg_rbs
• jt_max_field
• jt_misc
• jt_misc_fixes
• jt_move_field_type
• jt_mvr_126
• jt_mvr_fixes
• jt_mvr_nondeterminism
• jt_mvr_optimization
• jt_parse_rlen
• jt_pending_vector
• jt_pqueue
• jt_raw_pointer_removal
• jt_rbs
• jt_rbs_checkpoint_1
• jt_rbs_updates
• jt_rbs_v10
• jt_rbs_v6
• jt_rbs_v7
• jt_rbs_v8
• jt_rbs_v9
• jt_rbs_vb
• jt_readme
• jt_ref_api
• jt_ref_block
• jt_ref_block_mc
• jt_ref_block_traversal
• jt_single_reader_vectors
• jt_sparse_SVI
• jt_sync_cache_headers
• jt_sync_no_intervals
• jt_synced
• jt_tmp_pq
• jt_travis
• jt_tsca_tiling_const
• jt_unsigned
• jt_variant_header_merge
• jt_variant_intervals
• jt_vh_sample_index
• jt_vr_test_cleanup
• ks_genotype_field_value
• ks_genotype_field_value_jul_17
• ks_genotype_field_value_jul_22
• ks_genotype_field_value_jul_23
• ks_genotype_field_value_jul_24
• ks_genotype_field_value_jul_25
• ks_index_based_access_for_shared_and_individual_fields_aug_12
• ks_interval_sam_iteration_using_indexed_files_aug_14
• ks_interval_sam_iteration_using_indexed_files_issue_7
• ks_non_ref_het_211
• lb_276_add_interval_accessor
• lb_277_move_interval_changes_to_gamgee
• lb_rename_alleles_keys
• ldg_updateReadme
• master
• mc_add_field_conversion_api_175
• mc_add_sam_tests
• mc_api_docs_158
• mc_banish_all_const_member_variables
• mc_build_release_by_default
• mc_centralize_exceptions_170
• mc_cmake_clion
• mc_contig_renaming
• mc_contigs_highlander
• mc_coveralls
• mc_eliminate_gq_and_pl
• mc_eliminate_is
• mc_expunge_copy_then_move
• mc_fix_filter_unpacking
• mc_fix_n_samples
• mc_fix_variant_field_iterators
• mc_generic_test_utils_206
• mc_include_guards
• mc_index_based_api_162
• mc_individual_operator_equals_187
• mc_insert_size
• mc_interval_support_163
• mc_mate_alignment_stop
• mc_missing_string_value
• mc_missing_vector_105
• mc_more_tests
• mc_operator_equals_shared_186
• mc_random_cleanups
• mc_readme_updates_for_blog
• mc_refactor_fetch_next_record_192
• mc_reimplement_shared_fields
• mc_relase_mode_testing
• mc_remove_ycm_files
• mc_rename_format_field_type_171
• mc_rename_info_and_format
• mc_sam_header_fixes
• mc_snps_and_indels
• mc_travis_experiments
• mc_travis_update_cmake
• mc_update_boundary_checks
• mc_variant_id_field
• mc_variant_string_format_field_fix
• mc_website_dox_update
• mc_zip_iterator

Build # 1087

Build Type

push

travis-ci

Committed by jmthibault79

Commit Message

Fix bug in validation of vector lengths when setting individual fields

Previous validation routine would incorrectly allow nested vectors
whose first dimension was greater than but divisible by the number of
samples. Now validation of vector<vector> is separated from validation
of flattened vectors.

Run Details