broadinstitute / gamgee

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LAST BUILD ON BRANCH dr_copy_foghorn_submodule_update_script

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• dr_copy_foghorn_submodule_update_script
• ak_fix_samples_to_include_in_variant_reader
• ak_hadle_samples_in_variant_reader
• ak_ignore_emacs_temporaries
• ak_n_samples_error
• bh_IndividualFieldValueIterator_minus
• bh_select_if_doc
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• boost-build
• db_iterator_patch
• db_read_groups
• dr_VariantBuilderMultiSampleVector_bounds_checking
• dr_fix_IndividualFieldValue_missing
• dr_fix_additional_reader_segfaults_on_nonexistent_files
• dr_fix_float_missing_check
• dr_fix_genotype_encoding_of_vector_ends
• dr_fix_genotype_handling_of_vector_end
• dr_fix_includes_in_merged_lut
• dr_improve_variant_builder_doxygen
• dr_monolithic_gamgee_header
• dr_prevent_gt_field_set_using_integer_setters
• dr_remove_header_deep_copying
• dr_remove_obsolete_call_in_merge_variant_headers
• dr_rename_samtag_is_missing
• dr_rev_htslib_and_remove_synced_reader_hack
• dr_rev_htslib_nov6
• dr_test_multi_sample_vector_with_max_size_zero
• dr_variant_builder
• dr_variant_header_builder_case_sensitivity_bug
• dr_variant_missing_function
• dr_variantreader_fix_segfault_on_nonexistent_file
• dr_vb_auto_encode_genotypes
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• intel_boost-build
• intel_clang_fix
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• intel_individual_field_value_iterator_increment
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• intel_resize_lut
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• intel_signed_comparison_fixes
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• intel_vector_end
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• jt_api_226
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• ks_genotype_field_value
• ks_genotype_field_value_jul_17
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• ks_genotype_field_value_jul_24
• ks_genotype_field_value_jul_25
• ks_index_based_access_for_shared_and_individual_fields_aug_12
• ks_interval_sam_iteration_using_indexed_files_aug_14
• ks_interval_sam_iteration_using_indexed_files_issue_7
• ks_non_ref_het_211
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• ldg_updateReadme
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• mc_add_field_conversion_api_175
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• mc_centralize_exceptions_170
• mc_cmake_clion
• mc_contig_renaming
• mc_contigs_highlander
• mc_coveralls
• mc_eliminate_gq_and_pl
• mc_eliminate_is
• mc_expunge_copy_then_move
• mc_fix_filter_unpacking
• mc_fix_n_samples
• mc_fix_variant_field_iterators
• mc_generic_test_utils_206
• mc_include_guards
• mc_index_based_api_162
• mc_individual_operator_equals_187
• mc_insert_size
• mc_interval_support_163
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• mc_missing_string_value
• mc_missing_vector_105
• mc_more_tests
• mc_operator_equals_shared_186
• mc_random_cleanups
• mc_readme_updates_for_blog
• mc_refactor_fetch_next_record_192
• mc_reimplement_shared_fields
• mc_relase_mode_testing
• mc_remove_ycm_files
• mc_rename_format_field_type_171
• mc_rename_info_and_format
• mc_sam_header_fixes
• mc_snps_and_indels
• mc_travis_experiments
• mc_travis_update_cmake
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• mc_variant_id_field
• mc_variant_string_format_field_fix
• mc_website_dox_update
• mc_zip_iterator

Build # 1273

Build Type

push

travis-ci

Committed by droazen

Commit Message

Copy Joel's excellent submodule update shell script from foghorn to gamgee

This is really the only way we have found to work with branches that in
turn point to custom branches for submodules. It just works!

Run Details

2129 of 2247 relevant lines covered (94.75%)

1059.54 hits per line