broadinstitute / cms
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LAST BUILD ON BRANCH ct-cms
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tomkinsc 
Merge branch 'master' into ct-cms

5 of 5 relevant lines covered (100.0%)

2.0 hits per line

Relevant lines Covered
5 RELEVANT LINES 5 COVERED LINES
2.0 HITS PER LINE
Source Files on ct-cms
Coverage ∆ File Lines Relevant Covered Missed Hits/Line

Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
73 ct-cms Merge branch 'master' into ct-cms push tomkinsc travis-ci pending completion  
69 ct-cms Merge pull request #13 from broadinstitute/jv Fixed the way the VCF-encoding of the current allele is passed (cast as string before passed to TPED-coding function) push tomkinsc travis-ci pending completion  
67 ct-cms Update scans.py Pull #13 josephvitti travis-ci pending completion  
58 ct-cms improvements to encoding and multi-allelic merges genotype coding function can now specified in a separate python file via the —codingFunctionClassFile, containing a GenoCoder class with a coding_function(current_value, reference_allele, ancestra... push tomkinsc travis-ci pending completion  
57 ct-cms duplicate positions are now only written out if --considerMultiAllelic is specified rows with duplicate positions are now only written out if --considerMultiAllelic is specified push tomkinsc travis-ci pending completion  
56 ct-cms waypoint commit, to collapse multi-row loci collapses multiple SNP records for same site from multiple records to one tped row. somewhat experimental; this commit may break things. push tomkinsc travis-ci pending completion  
53 ct-cms updated README to resolve merge conflict push tomkinsc travis-ci pending completion  
51 ct-cms updated selscan version to 1.1.0 this is the version that includes left/right iHH information push tomkinsc travis-ci pending completion  
47 ct-cms follow-on to previous commit push tomkinsc travis-ci pending completion  
46 ct-cms first pass at tped processing handling X chromosome The VCF->TPED processing code now separates out record into files separated by count of genotypes present, to account for sections of haploid, diploid, and mixed regions, as in the case of sampl... push tomkinsc travis-ci pending completion  
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