46
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Ran 11 Jun 2015 09:47PM UTC

Jobs 2

Files 1

Run time 29s

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Build # 46

Build Type

push

travis-ci

Committed by

tomkinsc

Commit Message

first pass at tped processing handling X chromosome

The VCF->TPED processing code now separates out record into files
separated by count of genotypes present, to account for sections of
haploid, diploid, and mixed regions, as in the case of sample
populations containing male and female genotypes, and chromosome
positions within pseudoautosomal regions. Diploid sections are written
out with the standard file names (following the convention of autosomal
files), while regions deviating from polidy*(number of samples) are
written out to separate files with the genotype count appended (ex.
chrX_AFR2_1003.tped.gz, for chrX_AFR2 as the file output prefix, and
“_1003” indicating that there are 1003 genotypes for each of the loci
present in the file).

Run Details

5 of 5 relevant lines covered (100.0%)

2.0 hits per line

Jobs

ID	Job ID	Ran	Files	Coverage
1	46.1	11 Jun 2015 09:47PM UTC	0	100.0	Travis Job 46.1
2	46.2	11 Jun 2015 09:47PM UTC	0	100.0	Travis Job 46.2

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