NBISweden / AGAT

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Build # 12195795117

Build Type

push

github

Committed by web-flow

Commit Message

fix #457 remove attribute in gene_id and transcript_id to keep only the first … (#496)

* remove multi values in special attributes gene_id and transcript_id to keep only the first one. The others are saved in agat_other_gene_id or agat_other_ transcript_id

* when using merge_overlap_loci avoid to merge value for ID Parent and no gene_id too. Avoid to add ID created on the fly when creating merged_.

* add a deflate_attribute parameter. Make also a global variable for CONFIG to be available from everywhere (filled by get_agat_config)

* Update and add tests

Run Details

91 of 119 new or added lines in 5 files covered. (76.47%)

1 existing line in 1 file now uncovered.

12415 of 15318 relevant lines covered (81.05%)

2114.4 hits per line