FAANG / faang-format-transcriber
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v1.0: 95%

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lairdm 
Rewrite GFF3 metadata, simple hash based substitution like the base substitution filter

521 of 549 relevant lines covered (94.9%)

4.18 hits per line

Relevant lines Covered
549 RELEVANT LINES 521 COVERED LINES
4.18 HITS PER LINE
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Recent builds

Builds Branch Commit Type Ran Committer Via Coverage
48 master Rewrite GFF3 metadata, simple hash based substitution like the base substitution filter push lairdm travis-ci pending completion  
32 master - Removed debugging output from transcript_id callback - Created a GTF parser to enable properly parsing metadata in this format push lairdm travis-ci pending completion  
31 master - Updated documentation to describe '_all' filter macro - Added transcript_id filter to mirror gene_id to transcript_id in gene records to make tools such as RNA-SeqC happy with our GTF format - Updated GTF processor to properly format GTF on writ... push lairdm travis-ci pending completion  
30 master Allow streaming of http and gzip files in to the tool push lairdm travis-ci pending completion  
29 master - Slight refactor so Callback is a base to inherit from and the demo echo callback is named Echo - Update copyright year push lairdm travis-ci pending completion  
28 master - Fixed substitution of mapping entries for config file - Remapping module and example push lairdm travis-ci pending completion  
27 master Added filtering of end of reference blocks in gff3, so avoid multiple lines of ### push lairdm travis-ci pending completion  
26 master - Allow a 'metadata' ruleset in filters - Metadata is treated like an object for processing - Look-back buffer for the previous written record and the previous processed record push lairdm travis-ci pending completion  
25 master - Allow a ruleset called '_all' that will apply to all fields in record - Added a filter callback to do matching, regex and equalities on fields in a record to include or delete that record from the output push lairdm travis-ci pending completion  
24 master Allow erasing a record by flagging it as deleted push lairdm travis-ci pending completion  
See All Builds (36)