FAANG / faang-format-transcriber / 48

Builds Branch Commit Type Ran Committer Via Coverage
48 master Rewrite GFF3 metadata, simple hash based substitution like the base substitution filter push lairdm travis-ci pending completion   set done
47 v1.0 Rewrite GFF3 metadata, simple hash based substitution like the base substitution filter push lairdm travis-ci pending completion   set done
46 v1.0 Change example to use new chromosome mapping json format push lairdm travis-ci pending completion   set done
45 v1.0 Add functionality to remapping callback that any non-1 offset of a region triggers a remapping. push lairdm travis-ci pending completion   set done
44 v1.0 Error in dumping chromosome mappings, reverse mapping wasn't added. push lairdm travis-ci pending completion   set done
43 v1.0 Change example transcript_id filter from an input_filter to an output_filter push lairdm travis-ci pending completion   set done
42 v1.0 Chromosome mappings updated so species is at a separate level from ucsc_to_ensembl and ensembl_to_ucsc entries push lairdm travis-ci pending completion   set done
41 v1.0 Added compression support for the output file. push lairdm travis-ci pending completion   set done
40 v1.0 Missing output_format option when creating the format transcriber object push lairdm travis-ci pending completion   set done
39 v1.0 - Add a MeTooDelete callback module that looks backwards if a record has been deleted, and deletes the current record if so - Update the gff3_filter_large example to use MeTooDelete to full clean a GTF/GFF3 record set for large records push lairdm travis-ci pending completion   set done
38 v1.0 Max length of gxf or fasta record filter push lairdm travis-ci pending completion   set done
37 v1.0 Callback processor to rewrite fasta headers, given a fasta header format regex string and the lookup tables to use for substitution push lairdm travis-ci pending completion   set done
36 v1.0 A soft error if an attribute in the configuration file doesn't exist in the gxf file being processed. push lairdm travis-ci pending completion   set done
35 v1.0 Fix the example config uration files to use the long renamed sample Callback module push lairdm travis-ci pending completion   set done
34 v1.0 Experimental format conversion. Will likely only work GTF<->GFF3, metadata may not be formatted correctly, and if other format conversions are attempted it will likely explode spectacularly. push lairdm travis-ci pending completion   set done