Ensembl / ensembl-vep

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• fix/json-coord
• (detached from 2eb750f)
• 105.0
• 115_updates
• 2024_copright_update
• 87.22
• CNV-TR
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• add-known-bug
• add/annotation-stats
• add/clinvar_somatic_classification
• add/compara-install
• add/option_individual_zyg
• add/sv-id
• add/vcf-mobile-elements
• allele_match
• at7-patch-1
• bug/fix-version-data
• bugfix/hps-quotas-spaces
• bugfix/vep-scratch-dir
• cgi
• check_ext_nxt
• citation_add
• config_channel_separation
• copyright-update
• custom_more_fields
• custom_refac
• custom_vcf_coord
• dbd_mysql_version
• disable-max-sv-size-filter
• ens-lgil_issue_template
• epaule-patch-1
• error/mismatching-docker-version
• exclude-skipped-variants
• feature/sort_vcf_no_header
• fix-feature-coords
• fix-leaky-cache
• fix-test
• fix-uploaded-variation-try-parser
• fix/REST-SV-warnings
• fix/command-plugin-path
• fix/custom-annot-skip-vars
• fix/custom-skipping
• fix/default-database-value
• fix/fork-limit-off-by-one
• fix/main-tests
• fix/manta-BND-end
• fix/propagate-custom-header
• fix/relative-registry
• fix/singularity-permissions
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• fix/unit-tests
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• fix/web-vep-input-format
• fix_cache
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• fix_docker_warning
• fix_dump
• fix_gtf_transcript_version
• fix_gtf_transcript_version_116
• fix_hgnc_id
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• fix_multi_allelic
• fix_nextflow
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• fix_ut
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• gencode_promoter
• get_end/fix-tests
• gtf/ncbi-cds-microbes
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• hotfix/#1968-auto-should-imply-no-update
• improve-bnd
• improve/docker-action
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• install-dep-fix
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• patching_dbs_and_version
• postreleasefix/100
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• postreleasefix/87
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• release/87.9
• release/88
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• release/89
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• release/99
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• remove-nonindexed
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• remove_reg_func
• revert-1170-postreleasefix/107
• revert-120-release/91
• revert-1289-cn_terms_so
• revert/pr_1423
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• small-patches
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• space_filename
• sv_custom
• svo_overlap
• task/update_bam_mane_file
• task/update_mane_bam_file
• test-slurm
• test5.8
• tidy_up
• travis-updates/r104
• travis_ubuntu
• typo_fix
• update-travis,-readme-and-docker
• update-version
• update/clinvar_ref_allele
• update_copyright_2025
• update_gnomad_fields
• update_subversion
• update_vep_stats_command
• updating-readme
• uploaded_allele_fix
• version_114
• vr_fix_mane_duplicates